Here's the finished route:
First Cycle
200 Rupees
Second Cycle
SoDT when you are 9 and a half in-game hours away from the Ranch houses
Hit CT Owl, Withdraw 200R, Buy Bomb Bag + 20 Chus (70R) (20B) (20C)
ISG-ISS to Fence, Pull out Bomb while Sliding, Hover over Fence with Bomb and Chu, SS to GB (17B) (19C)
ISS to Water, Hit Owl, Get Zora Mask, Leaver Slide to South Bay (16B) (19C)
Flying Zora to Fountain, Blow up Rock with Chu, New Fairy Fountain Strat (12B) (10C)
SS to Owl, Hit Owl, 5 Bombs from Plant, Recoil Flip with Bomb down to River, Swim to Swamp, Go to Lost Woods, Get 10 Rupees, ISS from Bombchu, Get Bottle (15B) (9C)
ISS to Octo, Sidehops to Deku Palace, ISG-ISS past Deku Guards, Pull out Bomb while Sliding, Use old Zora Jump Strat, Get Sonata + SoS (11B) (9C)
Get 3 Deku sticks from Dekus and 1 Deku Stick from pot on the way to Woodfall Temple, Enter Temple
Mega Flips past Gap, Kill Lizarfos with Jumpslash Strat, Get Bow (9B) (8C)
Recoil Flip to get OoB, 8 Mega Flips, Kill Odolwa (1B) (0C)
Warp to CT, Buy 20 Chus, Leave to GB (0R) (1B) (20C)
ISG-ISS to bush, Get 15 Bombs, Jump down ledge, ISS to other Bush, Get 10 Bombs + 20 Rupees, ISG-ISS to Rock, Pull out Bomb while Sliding, 3 Bombchu Hovers, SS to Epona, Get Bottle (20R) (17B) (17C)
Warp to GB, Swim to Pirate's Fortress, Mega Flip past Gap, Get Hookshot, Zora Egg, Recoil Flip with Bomb to second Zora Egg, Deposit Eggs (14B) (16C)
Back to Pirate's Fortress, Skip Pirate Battle with 4 Bomb Hovers + 2 Mega Flips, Skip second Pirate Battle with Recoil Flip from Bomb, Deposit Eggs, Get rest of Zora Eggs, Learn NWBN (7B) (15C)
Play Zora Pots Game one time and get 5 Bombs from Stone, Go to South Bay Owl, Get 5 Bombs, Enter GBT (110R) (17B) (15C)
Mega Flip past Gap, Boss Key Skip with Bomb Staircase + 2 Bomb Hovers + 2 Mega Flip, Kill Gyorg, Get 5 Bombs from pot (14B) (12C)
Warp to Woodfall, Get 1 deku Stick from pot + 1 Deku Stick from Deku, Fairy Fountain Wrong Warp with new Strat, ISG-ISS up to Snowhead Temple (9B) (4C)
Block Skip, Azorae's Bridge Room Strat, Scarecrow Song Skip, Beat Wizrobe with 2 Arrows and 2 Deku Sticks, Get Fire Arrows, Hookshot to Torch (7B) (4C)
3 Bomb Hover + 1 Bombchu Hover to Snowballs, Bomb + Fire Arrow Strategy to Blow Up Snowballs (3B) (3C)
Mega Flip past Gap, Boss Key Skip, Kill Goth by ISS over to perfect shoot position (0B) (0C)
Get 5 Bombs from plant, Warp to CT, Buy 20 Chus + 10 Bombs, Warp to Ikana, Pull out Bomb while walking to plant, Get 5 Bombs, ISS up to Stone Tower (19B) (20C)
Climb Stone Tower with Mega Flips, enter ST (9B) (13C)
Bomb Staircase + Sidehop strategy past Sun Block, Get small key and minimize Magic Meter, so you can only use 4 Fire Arrows anymore (7B) (9C)
Bomb Staircase + Zora Grab Trick past Sun Block, Get 10 Bombs from enemys, Recoil Flips in Updraft Room, Kill Garo's Master with 4 Deku Sticks (13B) (6C)
Play SoS, Inverted Stone Tower with Mega Flip, Bomb Long Jump past first room, Boss Key Skip, Kill Twimmold with Fire Arrow Strat (6B) (1C)
Warp to CT, Use new strat for Clock Tower early, SS to Kid, Kick ass of Majora's Mask, EPIC WIN (2B) (0C)
So only 2 things left to test:
1. ISS > SS?
2. Death Warp out of ST
