Thanks to Scum, who found a way to fool the game timer.
New Old Diff
Stage Initial Total Initial Total Stage Total
Boot 0 172 0 174 -2 0
I 1 a 172 2027 174 2028 -1 -1
Transition 2199 277 2202 277 0 -1
2 a 2476 197 2479 198 -1 -2
Transition 2673 740 2677 740 0 -2
II 1 a 3413 973 3417 973 0 -2
Transition 4386 22 4390 22 0 -2
b 4408 816 4412 815 +1 -1
Transition 5224 22 5227 22 0 -1
c 5246 97 5249 97 0 -1
Transition 5343 22 5346 22 0 -1
d 5365 604 5368 604 0 -1
Transition 5969 277 5972 277 0 -1
2 a 6246 651 6249 652 -1 -2
Transition 6897 22 6901 22 0 -2
b 6919 613 6923 614 -1 -3
Transition 7532 22 7537 22 0 -3
c 7554 1416 7559 1426 -10 -13
Transition 8970 277 8985 277 0 -13
3 a 9247 191 9262 191 0 -13
Transition 9438 741 9453 741 0 -13
III 1 a 10179 1356 10194 1353 +3 -10
Transition 11535 277 11547 278 -1 -11
2 a 11812 2067 11825 2066 +1 -10
Transition 13879 277 13891 277 0 -10
3 a 14156 93 14168 93 0 -10
Partial 14249 14261 -10